Technology & Data Standards
Technology, from computational tools to communications strategies, is the critical infrastructure of science. Our group has diverse experience helping develop the tools and techniques that allow scientists to work.
While not obvious to the untrained, there is a growing need for the creation and implementation of data standards across all disciplines of science that use digital information. Our lab collaborates to help develop FAIR- and CARE-aligned data standards for Genomic Standards Consortium MIxS packages for eDNA and genomics.
Selected Published Works
The MIEM Guidelines: Minimum Information for publication of Environmental Metabarcoding data
Theroux S, ..., Jungbluth MJ, Jungbluth SP, ..., Klymus K. (submitted). The MIEM Guidelines: Minimum Information for publication of Environmental Metabarcoding data.
Best practice for publishing environmental DNA (eDNA) data according to FAIR principles
Takahashi M, ..., Jungbluth SP, et al. (in prep). Best practice for publishing environmental DNA (eDNA) data according to FAIR principles.
Bowers RM, ..., Jungbluth SP, ..., Woyke T. (2017). Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea. Nature Biotechnology, 35(8), 725–731. https://doi.org/10.1038/nbt.3893
Chivian D, Jungbluth SP, ..., Arkin AP. (2023). Metagenome-assembled genome extraction and analysis from microbiomes using KBase. Nature Protocols, 18(1), 208–238. https://doi.org/10.1038/s41596-022-00747-x
Marlow J, ..., Jungbluth SP, et al. (2017). Telepresence is a potentially transformative tool for field science. Proceedings of the National Academy of Sciences, 114(19), 4841–4844. https://doi.org/10.1073/pnas.1703514114
Chen, I-MA, ..., Jungbluth SP, ..., Kyrpides NC. (2019). IMG/M v.5.0: an integrated data management and comparative analysis system for microbial genomes and microbiomes. Nucleic Acids Research, 47(D1), D666–D677. https://doi.org/10.1093/nar/gky901